Bioconductor Epic microarray

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champ epic microarray normalization minfi

6.5 years ago Laura • 0

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minfi epic microarray bioconductor

updated 2.3 years ago by Lucy • 0 • written 6.6 years ago by c.sae-lee2 • 0

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2.2k

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bioconductor methylation epic microarray champ

6.8 years ago csappleby-mallinder1 • 0

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methylation epic microarray minfi methylationepic

7.7 years ago nhejazi • 0

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shinymethyl minfi epic microarray methylationepic qualitycontrol

7.7 years ago chelsey.ju • 0

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rnbeads methylation illumina epic microarray

8.2 years ago rasii • 0

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minfi dmpfinder dmp illuminahumanmethylationepicanno.ilmn10b.hg19 epic microarray

updated 8.4 years ago by James W. MacDonald 67k • written 8.4 years ago by Biologist ▴ 120

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1.8k

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minfi methylation EPIC microarray illumina

updated 8.5 years ago by Kasper Daniel Hansen ★ 6.5k • written 8.6 years ago by rasii • 0

8 results • Page 1 of 1

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Comment: Volcano plot has many values around zero by Michael Love 42k

It's positive over zero or nearly so.

Answer: Volcano plot has many values around zero by swbarnes2 ★ 1.4k

You've got genes with supposedly have a 32-fold difference, and the adjusted p-values are < 1x10-10? That seems odd.

Comment: Volcano plot has many values around zero by mjun • 0

Why this cluster close to 0 with low p value is so distinctive. Is this common? What does it mean and why? Thanks

Comment: Volcano plot has many values around zero by swbarnes2 ★ 1.4k

I don't think this is evidence that the dataset is invalid. It's evidence that your experiment is underpowered, and/or your experimental c…

Comment: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

Have you read the totalVI documentation?, which says: > **Important** > We do not recommend using totalVI denoised values in other differ…

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Comment: Weird looking volcano plot

Volcano plot has many values around zero

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Awards • All

Popular Question to Dario Strbenac ★ 1.5k

Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k